chr19:34309532:A>G Detail (hg19)

Information

Genome

Assembly Position
hg19 chr19:34,309,532-34,309,532
hg38 chr19:33,818,627-33,818,627 View the variant detail on this assembly version.

HGVS

[No Data.]
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:0.215
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:[No Data.]

Prediction

ClinVar

Clinical Significance
Review star [No Data.]
Show details
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
0.003 colorectal cancer Risk alleles for two obesity SNPs were associated with colorectal cancer risk--K... BeFree 22511254 Detail
<0.001 colorectal cancer Risk alleles for two obesity SNPs were associated with colorectal cancer risk--K... BeFree 22511254 Detail
0.791 obesity Risk alleles for two obesity SNPs were associated with colorectal cancer risk--K... BeFree 22511254 Detail
0.153 obesity Risk alleles for two obesity SNPs were associated with colorectal cancer risk--K... BeFree 22511254 Detail
<0.001 colorectal carcinoma Risk alleles for two obesity SNPs were associated with colorectal cancer risk--K... BeFree 22511254 Detail
<0.001 colorectal carcinoma Risk alleles for two obesity SNPs were associated with colorectal cancer risk--K... BeFree 22511254 Detail
0.153 obesity KCTD15 SNP rs29941 (P = 1 x 10(-3)) was significantly associated with fasting gl... BeFree 20061430 Detail
0.400 obesity KCTD15 SNP rs29941 (P = 1 x 10(-3)) was significantly associated with fasting gl... BeFree 20061430 Detail
0.003 obesity Of five studied variants, only two (SEC16B rs10913469, SH2B1 rs4788102) were nom... BeFree 23121087 Detail
0.021 obesity Of five studied variants, only two (SEC16B rs10913469, SH2B1 rs4788102) were nom... BeFree 23121087 Detail
0.153 obesity Of five studied variants, only two (SEC16B rs10913469, SH2B1 rs4788102) were nom... BeFree 23121087 Detail
0.278 obesity Of five studied variants, only two (SEC16B rs10913469, SH2B1 rs4788102) were nom... BeFree 23121087 Detail
Annotation

Annotations

DescrptionSourceLinks
Risk alleles for two obesity SNPs were associated with colorectal cancer risk--KCTD15 rs29941 [odds ... DisGeNET Detail
Risk alleles for two obesity SNPs were associated with colorectal cancer risk--KCTD15 rs29941 [odds ... DisGeNET Detail
Risk alleles for two obesity SNPs were associated with colorectal cancer risk--KCTD15 rs29941 [odds ... DisGeNET Detail
Risk alleles for two obesity SNPs were associated with colorectal cancer risk--KCTD15 rs29941 [odds ... DisGeNET Detail
Risk alleles for two obesity SNPs were associated with colorectal cancer risk--KCTD15 rs29941 [odds ... DisGeNET Detail
Risk alleles for two obesity SNPs were associated with colorectal cancer risk--KCTD15 rs29941 [odds ... DisGeNET Detail
KCTD15 SNP rs29941 (P = 1 x 10(-3)) was significantly associated with fasting glucose in the control... DisGeNET Detail
KCTD15 SNP rs29941 (P = 1 x 10(-3)) was significantly associated with fasting glucose in the control... DisGeNET Detail
Of five studied variants, only two (SEC16B rs10913469, SH2B1 rs4788102) were nominally associated wi... DisGeNET Detail
Of five studied variants, only two (SEC16B rs10913469, SH2B1 rs4788102) were nominally associated wi... DisGeNET Detail
Of five studied variants, only two (SEC16B rs10913469, SH2B1 rs4788102) were nominally associated wi... DisGeNET Detail
Of five studied variants, only two (SEC16B rs10913469, SH2B1 rs4788102) were nominally associated wi... DisGeNET Detail
Gene
-
dbSNP
rs29941 dbSNP
Genome
hg19
Position
chr19:34,309,532-34,309,532
Variant Type
snv
Reference Allele
A
Alternative Allele
G
ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
PASS
Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
rs29941
Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
0.2146
Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
3596
Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
16760
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